Funded Projects

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Award Type Award Year PI Name(s) Institution(s) Project
R01 2014
  • Laura Rozek
  • Maureen Sartor
  • University of Michigan
Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV-
R01 2013
  • Joshua Stuart
  • University of California, Santa Cruz
ESCE: Discovering Molecular Processes
R01 2013
  • Hiroyuki Yoshida
  • Massachusetts General Hospital
Cloud-Computer-Aided Diagnostic Imaging Decision Support System
R01 2013
  • William Noble
  • University of Washington
Interpreting Massive Genomic Data Sets via Summarization
R01 2002
  • Janan Eppig
  • Carol Bult
  • Jackson Laboratory
Electronic Access to Mouse Tumor Data
R21 2017
  • Nathalie Pochet
  • Brigham and Women's Hospital
Integrative genomic framework for dissecting regulatory mechanisms underlying hepatocellular carcinoma
R21 2016
  • Xiaodong Wu
  • University of Iowa
Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy
R21 2016
  • Lydia Kavraki
  • Gregory Lizee
  • Rice University
Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy
R21 2016
  • Dongjun Chung
  • Linda Kelemen
  • Medical University of South Carolina
Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes
U01 2017
  • Vincent Carey
  • Brigham and Women's Hospital
Accelerating Cancer Genomics with Cloud-Scale Bioconductor
U01 2017
  • Daniel Crichton
  • Raja Mazumder
  • Jet Propulsion Laboratory
  • George Washington University
Integration of comprehensive cancer mutation and expression-associated data for biomarker evaluation and discovery
U01 2016
  • Obi Griffith
  • Washington University in St. Louis
Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer
U01 2016
  • Srinivas Chakra Chennubhotla
  • Daryl Sarachan
  • Lansing Taylor
  • University of Pittsburgh
Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images
U01 2016
  • Xinshu Grace Xiao
  • University of California, Los Angeles
Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq
U01 2015
  • Lauren Jean O'Donnell
  • Harvard Medical School
Open Source Diffusion MRI Technology for Brain Cancer Research
U01 2015
  • Huang Kun
  • Ohio State University
Informatics Links between Histological Features and Genetics in Cancer
U01 2015
  • Michael Wigler
  • Alexander Krasnitz
  • Cold Spring Harbor Laboratory
Computational Framework for Single-Cell Genomics of Tumors
U01 2014
  • Guoqian Jiang
  • Mayo Clinic - Rochester, Minnesota
caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
U01 2014
  • Hong Yu
  • University of Massachusetts Medical School
EMR Adverse Drug Event Detection for Pharmacovigilance
U01 2014
  • Jingshan Huang
  • University of South Alabama
OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer
U01 2014
  • Benjamin Berman
  • Cedars-Sinai Medical Center
Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets
U01 2014
  • Bobbie-Jo Mary Webb-Robertson
  • Pacific Northwest National Laboratory
Interactive Informatics Resource for Research-driven Cancer Proteomics
U01 2013
  • Shirley Liu
  • Dana-Farber Cancer Institute
Developing Informatics Technologies to Model Cancer
U01 2013
  • Rachel Karchin
  • Johns Hopkins University
Informatics Tools for High-Throughput Analysis of Cancer Mutations
U01 2013
  • Elmer Bernstam
  • Funda Meric-Bernstam
  • University of Texas MD Anderson Cancer Center
  • University of Texas Health Sci. Center, Houston
Informatics to Enable Routine Personalized Cancer Therapy
U01 2011
  • John Quackenbush
  • Dana-Farber Cancer Institute
MeV: Software for Next Generation Genomic Data Analysis
U24 2016
  • Joshua Denny
  • Hua Xu
  • Ping Yang
  • Vanderbilt University
  • University of Texas Health Sci. Center, Houston
  • Mayo Clinic - Jacksonville, Florida
Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
U24 2016
  • Jill Mesirov
  • University of California, San Diego
The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research
U24 2016
  • Gabor Marth
  • Aaron Quinlan
  • University of Utah
Monitoring Tumor Subclonal Heterogeneity Over Time and Space
U24 2016
  • Han Liang
  • Gordon Mills
  • University of Texas MD Anderson Cancer Center
The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data
U24 2016
  • Timothy Griffin
  • University of Minnesota
A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers
U24 2016
  • Daniel Marcus
  • Richard Wahl
  • Washington University in St. Louis
Integrative Imaging Informatics for Cancer Research
U24 2016
  • Helen Parkinson
  • European Molecular Biology Laboratory
The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts
U24 2016
  • Rachel Karchin
  • Johns Hopkins University
Informatics Tools for High-Throughput Analysis of Cancer Mutations
U24 2015
  • Anant Madabhushi
  • Metin Nafi Gurcan
  • Anne Martel
  • Case Western Reserve University
  • Ohio State University
  • University of Toronto
Pathology Image Informatics Platform for Visualization, Analysis and Management
U24 2015
  • Gordon Harris
  • Harvard Medical School
Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research
U24 2015
  • Christos Davatzikos
  • Despina Kontos
  • University of Pennsylvania
Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
U24 2015
  • John Weinstein
  • Bradley Broom
  • University of Texas MD Anderson Cancer Center
Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
U24 2015
  • David Andrew Gutman
  • Lee Cooper
  • Emory University
Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer
U24 2015
  • Jill Mesirov
  • Broad Institute
GenePattern Notebooks for Cancer Research
U24 2015
  • John Quackenbush
  • Hugo Aerts
  • Dana-Farber Cancer Institute
Quantitative Radiomics System Decoding the Tumor Phenotype
U24 2014
  • Bruce Rosen
  • Jayashree Kalpathy-Cramer
  • Massachusetts General Hospital
Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
U24 2014
  • Joel Saltz
  • Stony Brook University
Tools to Analyze Morphology and Spatially Mapped Molecular Data
U24 2014
  • Martin Morgan
  • Roswell Park Cancer Institute
Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
U24 2014
  • Guergana Savova
  • Rebecca Crowley Jacobson
  • Boston Children's Hospital
  • University of Pittsburgh
Cancer Deep Phenotyping Extraction from Electronic Medical Records
U24 2014
  • Trey Ideker
  • University of California, San Diego
NDEx - the Network Data Exchange, A Network Commons for Biologists
U24 2013
  • Rebecca Crowley Jacobson
  • University of Pittsburgh
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
U24 2013
  • David Haussler
  • University of California, Santa Cruz
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser
U24 2013
  • Aviv Regev
  • Broad Institute
Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
U24 2013
  • Ron Kikinis
  • Andrey Fedorov
  • Brigham and Women's Hospital
  • Harvard Medical School
Quantitative Image Informatics for Cancer Research (QIICR)